Package: protein8k 0.0.1

protein8k: Perform Analysis and Create Visualizations of Proteins

Read Protein Data Bank (PDB) files, performs its analysis, and presents the result using different visualization types including 3D. The package also has additional capability for handling Virus Report data from the National Center for Biotechnology Information (NCBI) database.

Authors:Simon Liles

protein8k_0.0.1.tar.gz
protein8k_0.0.1.zip(r-4.5)protein8k_0.0.1.zip(r-4.4)protein8k_0.0.1.zip(r-4.3)
protein8k_0.0.1.tgz(r-4.5-any)protein8k_0.0.1.tgz(r-4.4-any)protein8k_0.0.1.tgz(r-4.3-any)
protein8k_0.0.1.tar.gz(r-4.5-noble)protein8k_0.0.1.tar.gz(r-4.4-noble)
protein8k_0.0.1.tgz(r-4.4-emscripten)protein8k_0.0.1.tgz(r-4.3-emscripten)
protein8k.pdf |protein8k.html
protein8k/json (API)

# Install 'protein8k' in R:
install.packages('protein8k', repos = c('https://simonliles.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/simonliles/protein8k/issues

Datasets:

On CRAN:

pdbproteinprotein-structure

4.00 score 1 stars 4 scripts 140 downloads 11 exports 65 dependencies

Last updated 4 years agofrom:4e97277448. Checks:3 OK, 5 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 05 2025
R-4.5-winNOTEFeb 05 2025
R-4.5-macNOTEFeb 05 2025
R-4.5-linuxNOTEFeb 05 2025
R-4.4-winNOTEFeb 05 2025
R-4.4-macNOTEFeb 05 2025
R-4.3-winOKFeb 05 2025
R-4.3-macOKFeb 05 2025

Exports:fromJSONLgetAtomicRecordgetTitleSectionplot3DplotModelsProtein3Dread.pdbreport_as_dataframesummarysummary.Proteinwrite_viz

Dependencies:base64encbslibcachemclicodetoolscolorspacecommonmarkcpp11crayoncurldigestdplyrfansifarverfastmapfontawesomefsgenericsggplot2gluegridExtragtablehtmltoolshttpuvisobandjquerylibjsonlitelabelinglaterlatticelifecyclelobstrmagickmagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigprettyunitspromisespryrR6rappdirsRColorBrewerRcpprjsonrlangsassscalesshinysourcetoolsstringistringrtibbletidyselectutf8vctrsviridisLitewithrxtable

Introduction to protein8k

Rendered fromintro_protein8k.Rmdusingknitr::rmarkdownon Feb 05 2025.

Last update: 2021-04-24
Started: 2021-04-02

Using plot3D()

Rendered fromusing_plot3D.Rmdusingknitr::rmarkdownon Feb 05 2025.

Last update: 2021-04-25
Started: 2021-04-25

Readme and manuals

Help Manual

Help pageTopics
fromJSONLfromJSONL
getAtomicRecordgetAtomicRecord
getTitleSectiongetTitleSection
P53 Tetramerization Domain Crystal Structurep53_tetramerization
plot3Dplot3D
plotModelsplotModels
Protein Class DefinitionsProtein-class
plot3DInteractiveProtein3D
read.pdbread.pdb
report_as_dataframereport_as_dataframe
summary.Proteinsummary summary,Protein,ANY-method summary,Protein-method
summary.Proteinsummary.Protein
write_vizwrite_viz