{
  "_id": "6ad3212490c8bbdf41a5117e",
  "Package": "protein8k",
  "Type": "Package",
  "Title": "Perform Analysis and Create Visualizations of Proteins",
  "Version": "0.0.2",
  "Authors@R": "person(given = \"Simon\",\nfamily = \"Liles\",\nrole = c(\"aut\", \"cre\"),\nemail = \"simon@quantknot.com\")",
  "Maintainer": "Simon Liles <simon@quantknot.com>",
  "Description": "Read Protein Data Bank (PDB) files, performs its analysis,\nand presents the result using different visualization types\nincluding 3D. The package also has additional capability for\nhandling Virus Report data from the National Center for\nBiotechnology Information (NCBI) database. Nature Structural\nBiology 10, 980 (2003) <doi:10.1038/nsb1203-980>. US National\nLibrary of Medicine (2021)\n<https://www.ncbi.nlm.nih.gov/datasets/docs/reference-docs/data-reports/virus/>.",
  "License": "CC0",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "cmake make libmagick++-dev gsfonts libuv1-dev\nlibssl-dev zlib1g-dev",
  "Repository": "https://simonliles.r-universe.dev",
  "Date/Publication": "2025-12-21 17:55:12 UTC",
  "RemoteUrl": "https://github.com/simonliles/protein8k",
  "RemoteRef": "HEAD",
  "RemoteSha": "3f93b11a4eeab04d2512fc07ff90456afc47ea17",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-17 07:07:48 UTC",
    "User": "root"
  },
  "Author": "Simon Liles [aut, cre]",
  "_user": "simonliles",
  "_type": "src",
  "_file": "protein8k_0.0.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/620ec061f0247e49041b9cc5bfe82a1ef03ad957d7843e4336716898b14ce21f",
  "_filesize": 5402252,
  "_sha256": "620ec061f0247e49041b9cc5bfe82a1ef03ad957d7843e4336716898b14ce21f",
  "_expires": "2027-01-25T07:17:54.000Z",
  "_created": "2026-10-17T07:07:48.000Z",
  "_published": "2026-10-17T07:17:56.530Z",
  "_buildurl": "https://github.com/r-universe/simonliles/actions/runs/39012244451",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 117337808981,
      "time": 117,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12093029779"
    },
    {
      "job": 117337808965,
      "time": 116,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12093267134"
    },
    {
      "job": 117337809004,
      "time": 173,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12093244088"
    },
    {
      "job": 117337809009,
      "time": 194,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12094240247"
    },
    {
      "job": 117337110935,
      "time": 227,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12093123962"
    },
    {
      "job": 117337808936,
      "time": 103,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12093154152"
    },
    {
      "job": 117337808959,
      "time": 77,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12093367560"
    },
    {
      "job": 117337808966,
      "time": 73,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12093745836"
    },
    {
      "job": 117337808987,
      "time": 71,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12093536385"
    }
  ],
  "_upstream": "https://github.com/simonliles/protein8k",
  "_commit": {
    "id": "3f93b11a4eeab04d2512fc07ff90456afc47ea17",
    "author": "SimonLiles <simon@quantknot.com>",
    "committer": "SimonLiles <simon@quantknot.com>",
    "message": "Fixed CRAN issues\n",
    "time": 1766339712
  },
  "_maintainer": {
    "name": "Simon Liles",
    "email": "simon@quantknot.com",
    "login": "simonliles",
    "description": "Data Science undergraduate Student. \n\nI have experience programming in R and Swift. ",
    "uuid": 70773861
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.1.2",
      "role": "Depends"
    },
    {
      "package": "lattice",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "magick",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "grid",
      "role": "Imports"
    },
    {
      "package": "gridExtra",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "rjson",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "shiny",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "simonliles",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-51",
      "n": 2
    }
  ],
  "_tags": [],
  "_topics": [
    "pdb",
    "protein",
    "protein-structure"
  ],
  "_stars": 1,
  "_contributors": [
    {
      "user": "simonliles",
      "count": 70,
      "uuid": 70773861
    }
  ],
  "_userbio": {
    "uuid": 70773861,
    "type": "user",
    "name": "SimonLiles",
    "followers": 2,
    "description": "Data Science undergraduate Student. \r\n\r\nI have experience programming in R and Swift. "
  },
  "_downloads": {
    "count": 352,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/protein8k"
  },
  "_devurl": "https://github.com/simonliles/protein8k",
  "_searchresults": 8,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/protein8k.html",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/simonliles/protein8k",
  "_realowner": "simonliles",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.0.1",
      "date": "2021-08-16"
    },
    {
      "version": "0.0.2",
      "date": "2025-12-21"
    }
  ],
  "_exports": [
    "fromJSONL",
    "getAtomicRecord",
    "getTitleSection",
    "plot3D",
    "plotModels",
    "Protein3D",
    "read.pdb",
    "report_as_dataframe",
    "summary",
    "summary.Protein",
    "write_viz"
  ],
  "_datasets": [
    {
      "name": "p53_tetramerization",
      "title": "P53 Tetramerization Domain Crystal Structure",
      "object": "p53_tetramerization",
      "class": [
        "Protein"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "fromJSONL",
      "title": "fromJSONL",
      "topics": [
        "fromJSONL"
      ]
    },
    {
      "page": "getAtomicRecord",
      "title": "getAtomicRecord",
      "topics": [
        "getAtomicRecord"
      ]
    },
    {
      "page": "getTitleSection",
      "title": "getTitleSection",
      "topics": [
        "getTitleSection"
      ]
    },
    {
      "page": "p53_tetramerization",
      "title": "P53 Tetramerization Domain Crystal Structure",
      "topics": [
        "p53_tetramerization"
      ]
    },
    {
      "page": "plot3D",
      "title": "plot3D",
      "topics": [
        "plot3D"
      ]
    },
    {
      "page": "plotModels",
      "title": "plotModels",
      "topics": [
        "plotModels"
      ]
    },
    {
      "page": "Protein-class",
      "title": "Protein Class Definitions",
      "topics": [
        "Protein-class"
      ]
    },
    {
      "page": "Protein3D",
      "title": "plot3DInteractive",
      "topics": [
        "Protein3D"
      ]
    },
    {
      "page": "read.pdb",
      "title": "read.pdb",
      "topics": [
        "read.pdb"
      ]
    },
    {
      "page": "report_as_dataframe",
      "title": "report_as_dataframe",
      "topics": [
        "report_as_dataframe"
      ]
    },
    {
      "page": "Protein-summary",
      "title": "summary.Protein",
      "topics": [
        "summary",
        "summary,Protein,ANY-method",
        "summary,Protein-method"
      ]
    },
    {
      "page": "summary.Protein",
      "title": "summary.Protein",
      "topics": [
        "summary.Protein"
      ]
    },
    {
      "page": "write_viz",
      "title": "write_viz",
      "topics": [
        "write_viz"
      ]
    }
  ],
  "_readme": "https://github.com/simonliles/protein8k/raw/HEAD/README.md",
  "_rundeps": [
    "base64enc",
    "bslib",
    "cachem",
    "cli",
    "commonmark",
    "cpp11",
    "curl",
    "digest",
    "dplyr",
    "farver",
    "fastmap",
    "fontawesome",
    "fs",
    "generics",
    "ggplot2",
    "glue",
    "gridExtra",
    "gtable",
    "htmltools",
    "httpuv",
    "isoband",
    "jquerylib",
    "jsonlite",
    "labeling",
    "later",
    "lattice",
    "lifecycle",
    "magick",
    "magrittr",
    "memoise",
    "mime",
    "otel",
    "pillar",
    "pkgconfig",
    "promises",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "rjson",
    "rlang",
    "S7",
    "sass",
    "scales",
    "shiny",
    "sourcetools",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "xtable"
  ],
  "_vignettes": [
    {
      "source": "intro_protein8k.Rmd",
      "filename": "intro_protein8k.html",
      "title": "Introduction to protein8k",
      "author": "Simon Liles",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Creating a Protein Object",
        "Inspecting Protein data.",
        "What is inside a Protein Object",
        "Plotting a Protein Object",
        "Generating 3D Plots",
        "Generating smoothing models of Protein Structure",
        "-----"
      ],
      "created": "2021-04-02 01:21:41",
      "modified": "2021-04-24 02:07:35",
      "commits": 4
    },
    {
      "source": "using_plot3D.Rmd",
      "filename": "using_plot3D.html",
      "title": "Using plot3D()",
      "author": "Simon Liles",
      "engine": "knitr::rmarkdown",
      "headings": [
        "The Most Basic Plot",
        "Animation",
        "Changing Drawing Type",
        "Setting groups Variable",
        "Changing the Orientation Using screen",
        "Putting it all Together"
      ],
      "created": "2021-04-25 20:23:02",
      "modified": "2021-04-25 20:23:02",
      "commits": 1
    }
  ],
  "_score": 4,
  "_indexed": true,
  "_nocasepkg": "protein8k",
  "_universes": [
    "simonliles"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.2",
      "date": "2026-10-17T07:09:52.000Z",
      "distro": "resolute",
      "commit": "3f93b11a4eeab04d2512fc07ff90456afc47ea17",
      "fileid": "https://r2.ropensci.org/6cf10804f305f29c9645a6d103a86ad9f61c6f8f964d0ae11d7bf3076e9c9b59",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/simonliles/actions/runs/39012244451"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.0.2",
      "date": "2026-10-17T07:09:52.000Z",
      "distro": "resolute",
      "commit": "3f93b11a4eeab04d2512fc07ff90456afc47ea17",
      "fileid": "https://r2.ropensci.org/2eb13a21269e63ea9eeb3813e657b49621646235bdbe36046e79b155c3eac3f4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/simonliles/actions/runs/39012244451"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.2",
      "date": "2026-10-17T07:13:13.000Z",
      "commit": "3f93b11a4eeab04d2512fc07ff90456afc47ea17",
      "fileid": "https://r2.ropensci.org/377ed8a8ad7d666cf2323da398095573d5a566bc42943e7841b6976483cf3728",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/simonliles/actions/runs/39012244451"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.0.2",
      "date": "2026-10-17T07:16:41.000Z",
      "commit": "3f93b11a4eeab04d2512fc07ff90456afc47ea17",
      "fileid": "https://r2.ropensci.org/78dced05c546345de11a0e3bd27e673faf5292a6882de641f28affe129e8650b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/simonliles/actions/runs/39012244451"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.2",
      "date": "2026-10-17T07:09:52.000Z",
      "commit": "3f93b11a4eeab04d2512fc07ff90456afc47ea17",
      "fileid": "https://r2.ropensci.org/fcedfd747e39cf3e56c5ef8b511c2f9d81598712b4b6505936bad3d879a8e681",
      "status": "success",
      "buildurl": "https://github.com/r-universe/simonliles/actions/runs/39012244451"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.2",
      "date": "2026-10-17T07:09:06.000Z",
      "commit": "3f93b11a4eeab04d2512fc07ff90456afc47ea17",
      "fileid": "https://r2.ropensci.org/8bd8cbe50e7ede4e2e8d83ded920aa414b4c951671b4a0de4f67b7c7b102d7e7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/simonliles/actions/runs/39012244451"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.2",
      "date": "2026-10-17T07:09:02.000Z",
      "commit": "3f93b11a4eeab04d2512fc07ff90456afc47ea17",
      "fileid": "https://r2.ropensci.org/7d2b57bc71b6ff8cbfefb2ad4f792a43995fcc67efba580f582e785db83c71fa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/simonliles/actions/runs/39012244451"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.0.2",
      "date": "2026-10-17T07:09:01.000Z",
      "commit": "3f93b11a4eeab04d2512fc07ff90456afc47ea17",
      "fileid": "https://r2.ropensci.org/e5eba9aee01df7eed2ce6958c9a8204e0627f6803a1f3c63ca105e3b7d217f4d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/simonliles/actions/runs/39012244451"
    }
  ]
}